So, this is the guide: https://gist.github.com/Irastris/31766414a981a056d49c1242a019829a
It talks about FunKiiU (which works fine on Linux) and cdecrypt (which is Windows-only).
Are there alternatives to cdecrypt which run on Linux?
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I presume the Linux version is the same (I used the Windows version) but WiiUDownloader gives you a lovely graphical interface to download anything from the WiiU eShop servers. Even copies files straight to an SD card ready to install on your WiiU.